A collection of scripts and notes related to genomics and bioinformatics

😴 📂 Create and Query a Local Copy of GenBank in R

Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within distal enhancers, and link these enhancers to downstream target genes

A Framework for Coalescent Simulation in R

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench

G4-iM Grinder is a fast, robust and highly adaptable algorithm. It is capable of locating, identifying, qualifying and quantifying DNA and RNA potential quadruplex structures, such as G-quadruplex, i-Motifs and their higher order versions.

De novo SNV analysis pipeline

Program in R for calculating RSCU.

Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)

R-package to analyse data from the immuno-detection by sequencing (ID-seq) technology.

Sample size and power for association studies involving mitochondrial DNA haplogroups -

Analysis of genotype data from 23andMe DNA testing.

GitHub Repository for "Layered Exploratory Omics (LEO)" Package

Software suite for oligonucleotide native MS data treatment

📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.

Personal library for analyzing genomic data...

Cleans spectrophotometry data from the Denovix DS-X

DNA Imputation tool for Generis.

Identification of epigenetic sites in MealyBugs using ONT Nanopore Sequencing