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@ProteinDesignLab

Protein Design Lab

Possu Huang Lab, Stanford Bioengineering

Popular repositories Loading

  1. protpardelle protpardelle Public

    Diffusion-based all-atom protein generative model.

    Python 225 19

  2. protein-design-tutorials protein-design-tutorials Public

    Tutorials, cheat sheets, and other resources for computational methods for protein design.

    Jupyter Notebook 123 28

  3. protein_seq_des protein_seq_des Public

    Code for our paper "Protein sequence design with a learned potential"

    Python 81 24

  4. caliby caliby Public

    Potts model-based protein sequence design

    Python 64 10

  5. protpardelle-1c protpardelle-1c Public

    Updated Protpardelle models with more robust motif scaffolding and multichain support

    Python 50 11

  6. IgVAE IgVAE Public

    Forked from egurapha/IgVAE

    A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.

    Python 30 5

Repositories

Showing 10 of 12 repositories
  • protpardelle-1c Public

    Updated Protpardelle models with more robust motif scaffolding and multichain support

    ProteinDesignLab/protpardelle-1c’s past year of commit activity
    Python 50 MIT 11 1 0 Updated Nov 25, 2025
  • caliby Public

    Potts model-based protein sequence design

    ProteinDesignLab/caliby’s past year of commit activity
    Python 64 Apache-2.0 10 0 0 Updated Nov 13, 2025
  • protpardelle Public

    Diffusion-based all-atom protein generative model.

    ProteinDesignLab/protpardelle’s past year of commit activity
    Python 225 MIT 19 4 0 Updated Aug 27, 2025
  • protein_shapes Public

    Metrics to evaluate distributional coverage of generative models of protein structures.

    ProteinDesignLab/protein_shapes’s past year of commit activity
    Python 17 MIT 3 1 1 Updated Aug 13, 2025
  • protein_seq_des Public

    Code for our paper "Protein sequence design with a learned potential"

    ProteinDesignLab/protein_seq_des’s past year of commit activity
    Python 81 BSD-3-Clause 24 0 0 Updated Sep 8, 2023
  • protein-design-tutorials Public

    Tutorials, cheat sheets, and other resources for computational methods for protein design.

    ProteinDesignLab/protein-design-tutorials’s past year of commit activity
    Jupyter Notebook 123 28 0 0 Updated Aug 15, 2023
  • IgVAE Public Forked from egurapha/IgVAE

    A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.

    ProteinDesignLab/IgVAE’s past year of commit activity
    Python 30 BSD-3-Clause 10 0 0 Updated Jul 25, 2022
  • IgFold Public Forked from Graylab/IgFold

    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    ProteinDesignLab/IgFold’s past year of commit activity
    Python 0 70 0 0 Updated May 4, 2022
  • ColabFold Public Forked from sokrypton/ColabFold

    Making Protein folding accessible to all via Google Colab!

    ProteinDesignLab/ColabFold’s past year of commit activity
    Jupyter Notebook 0 MIT 674 0 0 Updated Aug 7, 2021
  • visualize_violations Public

    Script for visualizing wrong/violated predictions in PyMol

    ProteinDesignLab/visualize_violations’s past year of commit activity
    Python 3 1 0 0 Updated Jun 14, 2020

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